Looks like we finally have a proper clarification on the XSEED branding sitauation:
Flower, Sun, and Rain in June will be the last game published under the Marvelous Entertainment USA label for a while, and we had a chance to become the sole publisher on other titles that were originally supposed to be under the co-publishing agreement with Marvelous Entertainment USA. Of course we wanted all titles that we were already working together on under the XSEED Games banner moving forward, but unfortunately that didn't happen and we have to respect the decision that was made.
Sure, we may have lost one title, but we'll be announcing tons more titles between now and E3 so stay tuned.
I just wish they just kept the MMV USA branding for consistency.